English

İstanbul Medipol Üniversitesi
Uluslararası Tıp Fakültesi

Hocalarımızın Yayınları


Bektas S, Öztürk G. Enhancement of cultured adult motor neuron survival with cold pre-incubation, Neurosci Lett. 533:23-7 2013

Cengiz N, Öztürk G, Erdogan E, Him A, Elif OK. Consequences of Neurite Transection In Vitro. J Neurotrauma, 29:2465:74, 2012.

Öztürk G, Cengiz N, Erdogan E, Him A, Oguz EK, Yenidünya E, Ayşit N. Two distinct types of dying back degeneration in vitro. Neuropathol Appl Neurobiol, 27:2465-2474, 2012

Demir O, Aysit N, Onder Z, Turkel N, Ozturk G, Sharrocks AD, Kurnaz IA. ETS-domain transcription factor Elk-1 mediates neuronal survival: SMN as a potential target. Biochim Biophys Acta, 1812:6, 652-66, 2011

 

Kilic E, Özdemir YG, Bolay H, Keleştimur H, Dalkara T. Pinealectomy aggravates and melatonin administration attenuates brain damage in focal ischemia (1999) Journal of Cerebral Blood Flow and Metabolism, 19 (5), pp. 511-516.

Kilic E, Dietz GPH, Hermann DM, Bähr M. Intravenous TAT-Bcl-XL is protective after middle cerebral artery occlusion in mice (2002) Annals of Neurology, 52 (5), pp. 617-622.

Kilic E, Kilic Ü, Soliz J, Bassetti CL, Gassmaim M, Hermann DM. Brain-derived erythropoietin protects from focal cerebral ischemia by dual activation of ERK-1/-2 and Akt pathways (2005) FASEB Journal, 19 (14), pp. 2026-2028.

Spudich A, Kilic E, Xing H, Kilic Ü, Rentsch KM, Wunderli-Allenspach H, Bassetti CL, Hermann DM. Inhibition of multidrug resistance transporter-1 facilitates neuroprotective therapies after focal cerebral ischemia (2006) Nature Neuroscience, 9 (4), pp. 487-488.

Kilic E, Kilic Ü, Wang Y, Bassetti CL, Marti HH, Hermann DM. The phosphatidylinositol-3 kinase/Akt pathway mediates VEGF’s neuroprotective activity and induces blood brain barrier permeability after focal cerebral ischemia (2006) FASEB Journal, 20 (8), pp. E307-E314.

Kilic Ü, Hermann DM, Kilic E, Järve, A, Guo, Z, Spudich, A, Bieber, K, Marti HH. Human vascular endothelial growth factor protects axotomized retinal ganglion cells in vivo by activating ERK-1/2 and Akt pathways (2006) Journal of Neuroscience, 26 (48), pp. 12439-12446.

Kilic E, Hermann DM, Spudich A, Kilic Ü, Rentsch KM, Vig R, Matter CM, Bassetti CL. ABCC1: A gateway for pharmacological compounds to the ischaemic brain (2008) Brain, 131 (10), pp. 2679-2689.

Kilic E, Elali A, Kilic U, Guo Z, Ugur M, Uslu U, Bassetti CL, Hermann DM. Role of Nogo-A in neuronal survival in the reperfused ischemic brain (2010) Journal of Cerebral Blood Flow and Metabolism, 30 (5), pp. 969-984.

Seker FB, Kilic U; Ekimci N, Ethemoglu MS, Caglayan B, Demirci S, Dogan S, Oztezcan S, Sahin F, Yilmaz B, Kilic E. HMG-CoA reductase inhibitior rosuvastatin improves abnormal brain electrical activity via mechanisms involving eNOS. Neuroscience. 2015. 284: 349-359

Kilic E, Reitmeir R, Kilic Ü, Caglayan AB, Beker MC, Kelestemur T, Ethemoglu S, Ozturk G, Hermann DM. HMG-CoA reductase inhibition promotes stroke recovery, perilesional tissue remodeling and contralesional pyramidal tract plasticity. Frontiers in Cellular Neuroscience. (in press) 2014.

 

Başar, E., Güntekin, B., Öniz, A., Principles of Oscillatory Brain Dynamics and A Treatise of Recognition of Faces and Facial Expressions. Review. Volume on ERD of the Series Prog. Brain Res. 2006;159:43-62.

Yener, G.G., Güntekin, B., Öniz, A., Başar, E., Increased Frontal Phase-locking of Event Related Theta Oscillations in Alzheimer Patients Treated with Acetylcholine-Esterase Inhibitors. Int. J. Psychophysiol. 2007;64(1): 46-52.

Başar, E., Güntekin, B., A Breakthrough in Neuroscience needs a “Nebulous Cartesian System”Oscillations, Quantum Dynamics and Chaos in the Brain and Vegetative System. Int. J. Psychophysiol. 2007; 64(1):108-22.

Güntekin, B., Başar, E., Emotional Face Expressions are Differentiated with Brain Oscillations. Int. J. Psychophysiol. 2007; 64(1):91-100.

Güntekin, B., Başar, E., Brain Oscillations are Highly Influenced by Gender Differences. Int. J. Psychophysiol. 2007; 65(3):294-9.

Güntekin, B., Başar, E., Gender Differences Influence Brain’s Beta Oscillatory Responses in Recognition of Facial Expressions. Lett. 2007;424(2):94-9.

Yener, G.G., Güntekin, B., Başar, E., Event Related Delta Oscillatory Responses of Alzheimer Patients. J. Neurol. 2008; 15(6):540-7.

Güntekin, B., Saatçi, E., Yener, G.G., Decrease of Evoked Delta, Theta and Alpha Coherences in Alzheimer Patients During a Visual Oddball Paradigm. Brain Res. 2008; 1235:109-16.

Özerdem, A., Güntekin, B., Tunca, Z., Başar, E., Brain Oscillatory Responses in Patients with Bipolar Disorder Manic Episode Before and After Valproate Treatment. Brain Res. 2008; 1235:98-108.

Başar, E., Güntekin, B., A Review of Brain Oscillations in Cognitive Disorders and the Role of Neurotransmitters. Brain Res. 2008; 1235:172-93.

Güntekin B., Başar, E., Facial Affect Manifested with Multiple Oscillations. Int. J. Psychophysiol., J. Psychophysiol. 2009; 71(1):31-6.

Başar, E., Güntekin, B., Darwin’s Evolution Theory, Brain Oscillations, and Complex Brain Function in a New “Cartesian View”. J. Psychophysiol. 2009; 71(1):2-8.

Başar, E., Güntekin, , Bergson’s Intuition and Memory in View of NeuroQuantology. Neuroquantology.2009; 7(4): 602-608.

Başar, E., Güntekin, B., An Essay on Darwin’s Theory and Bergson’s Creative Evolution in the Era of NeuroQuantology. Neuroquantology 2009;7(4):609-622.

Yener, G.G., Güntekin, B., Tülay, E., Başar, E., A Comparative Analysis of Sensory Visual Evoked Oscillations With Visual Cognitive Event Related Oscillations in Alzheimer’s Disease. Neuroscience Letters 2009; 462(3):193-197.

Özerdem, A., Güntekin, B., Saatçi, E., Tunca, Z., Başar, E., Disturbance in Long Distance Gamma Coherence in Bipolar Disorder. Neuropsychopharmacol. Biol. Psychiatry. 2010; 34(6):861-5.

Güntekin, B., Başar, E., A New Interpretation of P300 Responses Upon Analysis of Coherences. Cognitive Neurodynamics 2010; 4(2-3):107-118.

Başar, E., Güntekin, B., Tülay, E., Yener, G.G., Evoked and Event Related Coherence of Alzheimer Patients Manifest Differentiation of Sensory-Cognitive Networks. Brain Research 2010; 1357:79-90.

Güntekin, B., Basar, E., 2010. Event-Related Beta Oscillations are Affected by Emotional Eliciting Stimuli. Neuroscience Letters 2010; 483:173–178.

Özerdem, A., Güntekin, B., Atagün, İ.M., Turp, B., Başar, E., Reduced Long Distance Gamma (28–48 Hz) Coherence in Euthymic Patients with Bipolar Disorder. Journal of Affective Disorders 2011; 132:325–332.

Yener, G.G., Güntekin, B., Orken, D.N., Tülay, E., Forta, H., Başar, E., Auditory Delta Event-Related Oscillatory Responses are Decreased in Alzheimer’s Disease. Behav. Neurol. 2012; 25(1):3-11.

Başar, E., Güntekin, B., Atagün, İ.M., Turp-Gölbaşı, B., Tülay, E., Özerdem, A., Brain’s Alpha Activity is Highly Reduced in Euyhymic Bipolar Disorder Patients. Cognitive Neurodynamics 2012; 6(1):11-20.

Başar, E., Güntekin, B., A Short Review of Alpha Activity in Cognitive Processes and in Cognitive Impairment. J. Psychophysiol. 2012; 86(1):25-38.

Atagün, M.İ., Güntekin, B., Özerdem, A., Tülay, E., Başar, E., Decrease of Theta Response in Euthymic Bipolar Patients During an Oddball Paradigm. Cognitive Neurodynamics 2013, Volume 7,Issue 3, pp 213-223

Yener GG, Kurt P, Emek-Savaş DD, Güntekin B, Başar E. Reduced visual event-related delta oscillatory responses in amnestic mild cognitive impairment. J Alzheimers Dis. 2013 Jan 1;37(4):759-67.

Güntekin B.,Emek-Savaş D.D.,Kurt P.,Yener G.G.,Başar E.,2013. Beta oscillatory responses in healthy subjects and subjects with mild cognitive impairment, Neuroimage Clin. 2013 Jul 17;3:39-46. Türkiye

Atagün, M.İ., Güntekin, B,  Masali, B., Tülay, E., Başar E. 2014. Decrease of event-related delta oscillations in euthymic patients with bipolar disorder. Psychiatry Research Neuroimaging, 2014 Jul 30;223(1):43-8.

Güntekin, E. Başar. A Review of Brain Oscillations in Perception of Faces and Emotional Pictures,Neuropsychologia,2014, May, 58C, 33-51;

Pınar Kurt, Derya Durusu Emek-Savaş, Kübra Batum,Bilge Turp, Bahar Güntekin,Sibel Karşıdağ, Görsev Gülmen Yener “Patients with Mild Cognitive Impairment Display Reduced Auditory Event-Related Delta Oscillatory Responses,” Behavioural Neurology, vol. 2014, Article ID 268967, 11 pages, 2014.

Başar E., Düzgün A., Güntekin B.,.A proposal to extend Brodmann’s areas concept to a new model . Neuroquantology. Volume 12, Issue 2, 2014, Pages 201-209.

Güntekin B, Tülay E. Event related beta and gamma oscillatory responses during perception of affective pictures. Brain Res. 2014 Jun 30. pii: S0006-8993(14)00845-2. doi: 10.1016/j.brainres.2014.06.029.

Yener GG, Savaş DD, Güntekin B, Başar E. The visual cognitive network, but not the visual sensory network, Is affected in amnestic mild cognitive impairment: a study of brain oscillatory responses. Brain Res. 2014 Aug 21. pii:S0006-8993(14)01113-5. doi: 10.1016/j.brainres.2014.08.038. [Epub ahead of print]

Murat Ilhan Atagun, Bahar Güntekin,Devran Tan, Emine Elif Tülay,Erol Başar. Lithium Excessively Enhances Event Related Beta Oscillations in Patients with Bipolar Disorder. Journal of Affective Disorders, Volume 170, 1 January 2015, Pages 59–65.

Başar E, Tülay E, Güntekin B. Multiple gamma oscillations in the brain: A new strategy to differentiate functional correlates and P300 dynamics. Int J Psychophysiol. 2015 Mar;95(3):406-20, Türkiye

Savaş DD, Güntekin B,, Yener GG, E. Başar. Decrease of delta oscillatory responses is associated with increased age in healthy elderly. Int J Psychophysiol 2015, Feb 7. pii: S0167-8760(15)00036-7. doi: 10.1016/j.ijpsycho.2015.02.006. [Epub ahead of print].

Tan D, Özerdem A, Güntekin B, Atagün MI, Tülay E., Karadağ F, BaşarE. Increased beta frequency (15-30 Hz) oscillatory responses in euthymic bipolar patients under lithium monotherapy. Clinical EEG and Neuroscience Dec 2. pii: 1550059414561056

Yener GG, Savaş DD, Lizio R., Çavuşoğlu B., Carducci F., Ada e., Güntekin B., Babiloni C., Başar E. Frontal delta event-related oscillations relate to frontal volume in mild cognitive impairment and healthy controls. Int J Psychophysiol 2015, Feb 7. pii: S0167-8760(15)00035-5. doi: 10.1016/j.ijpsycho.2015.02.005. [Epub ahead of print].

Güntekin, E. Başar. Review of evoked and event-related delta responses in the human Brain. Int J Psychophysiol 2015, Feb 7. pii: S0167-8760(15)00031-8. doi:

Başar, C. Schmiedt-Fehr, B. Mathes, B. Femir, DD. Emek-Savaş, E. Tülay, D. Tan, A. Düzgün, B. Güntekin, A. Özerdem, G. Yener, C. Başar-Eroğlu.What the broken brain tells to the neuroscientist? Oscillations and connectivity in Schizophrenia, Alzheimer’s Disease, Bipolar Disorders., Int J Psychophysiol 2015,Feb 7. pii: S0167-8760(15)00034-3. doi: 10.1016/j.ijpsycho.2015.02.004

Başar, DD. Emek-Savaş, B. Güntekin, G. Yener. Delay of cognitive gamma responses in Alzheimer’s disease. Neuroimage Clinical. 2016; 11: 106-115.

Emek-Savaş DD, Özmüş G, Güntekin B, Dönmez Çolakoğlu B, Çakmur R, Başar E,Yener GG. Decrease of Delta Oscillatory Responses in Cognitively Normal Parkinson’s Disease. Clin EEG Neurosci. 2016 Aug 31. pii: 1550059416666718

 

Yildirim, S., Yeoman, CJ., Chandra, SJ., Thomas, SM., Ho, M., Leigh, SR., White, BA., Wilson, BA., and Stumpf, RM. 2014. Primate vaginal microbiota exhibit species specificity without phylogenetic congruence or universal Lactobacillus dominance (ISME J. 2014 Jul 18. doi: 10.1038/ismej.2014.90. [Epub ahead of print]).

Stumpf RM, Wilson BA, Rivera A, Yildirim S, Yeoman CJ, Polk JD, White BA, Leigh SR. 2013. The primate vaginal microbiome: comparative context and implications for human health and disease. Am J Phys Anthropol. 57:119-34

Thompson, MG, Black, CC, Pavlicek, RL, Honnold, CL, Wise, MC, Alamneh, YA, Williams, R, Kirkup, BC, Yildirim, S, Si, Y, Green, RK, Kessler, JL, Moon, JK, Palys, TJ, Zurawski, DV. 2013. Validation of a Novel Murine Wound Model of Acinetobacter baumannii Infection. Antimicrob. Agents Chemother. Antomicrob. Agents Chemotherap. 58:1332-42

Amato KR, Yeoman CJ, Kent A, Righini N, Carbonero F, Estrada A, Gaskins HR, Stumpf RM, Yildirim S, Torralba M, Gillis M, Wilson BA, Nelson KE, White BA and Leigh SR*. 2013. Habitat degradation impacts black howler monkey (Alouatta pigra) gastrointestinal microbiomes. J. ISME. 7:1344-53

Broadway M, Rogers E, Chang C., Huang I, Dwivedi P, Yildirim S, Schmitt S, Das A., and Ton-That H*. 2013. Pilus gene pool variation and the virulence of Corynebacterium diphtheriae clinical isolates during infection of a nematode. J. Bacteriology. 195:3774-83

Ratani SS, Siletzky RM, Dutta V, Yildirim S, Osborne JA, Lin W, Hitchins AD, Ward TJ, Kathariou S*. 2012. Heavy metal and disinfectant resistance of Listeria monocytogenes from foods and food processing plants. Appl Environ Microbiol. 78:6938-45

Yildirim, S. (2012). Terrestrial Vertebrate Animal Metagenomics, Non-domesticated Primates: Prosimians. In, Encyclopedia of Metagenomics, Animals. Ed. Karen E Nelson (Editor in Chief), Bryan A. White, Sarah Highlander, Francisco Rodriguez-Valera (Volume editors). Springer.

Yeoman CJ, Chia N., Yildirim S., Miller MEB., Kent A., Stumpf R., Leigh S.R., Nelson KE., White BA*., Wilson BA. 2011. Towards an Evolutionary Model of Animal-Associated Microbiomes. J. Entropy. 13:570-594.

Yildirim S, Yeoman, CJ., Sipos, M., Wilson, BA., Goldberg, TL., Stumpf, R, Leigh, SL., White, BA*, and Nelson, KE. 2010. Characterization of the Fecal Microbiome from Non-Human Wild Primates Reveals Species Specific Microbial Communities. PLoS ONE 5: e13963.

Yeoman CJ, Yildirim S, Thomas SM, Durkin AS, Torralba M, Sutton, G., Buhay, CJ., Ding, Y., Dugan-Rocha, SP., Muzny,DM., Qin, X., Gibbs, RA., Leigh, SR., Stumpf, R., White, BA., Highlander, SK., Nelson, JE., and Wilson, BA*. 2010. Comparative Genomics of Gardnerella vaginalis Strains Reveals Substantial Differences in Metabolic and Virulence Potential. PLoS ONE 5: e12411

Yildirim S., ElHanefi, D., Lin W, Hitchins AD, RM, Siletzky, and Kathariou, S*. 2010. Conserved genomic localization and sequence content of Sau3AI-like restriction-modification gene cassettes between Listeria monocytogenes Epidemic Clone I and selected strains of serotype 1/2a. Appl. Envir. Microb, 76:5577

Attardo, GM, Lohs, C., Alam, UH., Yildirim, S., and Aksoy, S*. 2008. Analysis of milk gland structure and function in Glossina morsitans: Milk protein production, symbiont populations and fecundity. J Insect Physiol. 54:1236-42

Yildirim S., Lin W, Hitchins AD, Jaykus LA, Altermann E, Klaenhammer TR, Kathariou S*. 2004. Epidemic clone-I specific genetic markers in strains of Listeria monocytogenes serotype 4b from foods. Appl Env. Microbiology. 70:4158-64

Johnson J, Jinneman K, Stelma G, Smith BG, Lye D, Messer J, Ulaszek J, Evsen L, Gendel S, Bennett RW, Swaminathan B, Pruckler J, Steigerwalt A, Kathariou S, Yildirim S, Volokhov D, Rasooly A, Chizhikov V, Wiedmann M, Fortes E, Duvall RE, Hitchins AD*. 2004. Natural atypical Listeria innocua strains with Listeria monocytogenes pathogenicity island-I genes. Appl Env. Microbiol. 70:4256-66

Yildirim S, Fuentes RG, Evangelista R, and Nikolov ZL*. 2002. Fractionation of Transgenic Corn for Optimal Recovery of Recombinant Enzymes. JAOCS. 79:809-814

von Carlowitz-Ghori K, Bayraktaroglu Z, Waterstraat G, Curio G, Nikulin VV. Voluntary control of corticomuscular coherence through neurofeedback: A proof-of-principle study in healthy subjects. Neuroscience, 2015, 290:243-254. doi: 10.1016/j.neuroscience.2015.01.013

von Carlowitz-Ghori K, Bayraktaroglu Z, Hohlefeld FU, Losch L, Curio G, Nikulin VV. Corticomuscular coherence in acute and chronic stroke. Clinical Neurophysiology, 2013, 125(6):1182-1191. doi: 10.1016/j.clinph.2013.11.006

Bayraktaroglu Z, von Carlowitz-Ghori K, Curio G, Nikulin VV. It is not all about phase: Amplitude dynamics in corticomuscular interactions. NeuroImage, 2012, 64C:496-504. doi: 10.1016/j.neuroimage.2012.08.069

Bayraktaroglu Z, von Carlowitz-Ghori K, Losch F, Nolte G, Curio G, Nikulin VV. Optimal imaging of cortico-muscular coherence through a novel regression technique based on multi-channel EEG and un-rectified EMG. NeuroImage, 2011, 57(3):1059-1067. doi: 10.1016/j.neuroimage.2011.04.071

von Carlowitz-Ghori K, Hohlefeld FU, Bayraktaroglu Z, Curio G, Nikulin VV. Effect of complete stimulus predictability on P3 and N2 components: An EEG study. NeuroReport, 2011, 22(9):459-463. doi: 10.1097/WNR.0b013e3283476bdb

Bayram A, Bayraktaroglu Z, Karahan E, Erdogan B, Bilgic B, Ozker M, Kasikci I, Duru AD, Ademoglu A, Ozturk C, Arikan K, Tarhan N, Demiralp T. Simultaneous EEG/fMRI Analysis of the Resonance Phenomena in Steady-State Visual Evoked Responses. Clinical EEG and Neuroscience, 2011, 42(2):98-106. doi: 10.1177/155005941104200210

Emir UE, Bayraktaroglu Z, Ozturk C, Ademoglu A, Demiralp A. Changes in BOLD transients with visual stimuli across 1–44Hz. Neuroscience Letters, 2008, 436(2):185-188. doi: 10.1016/j.neulet.2008.03.021

Demiralp T, Bayraktaroglu Z, Lenz D, Junge S, Busch NA, Maess B, Ergen M, Herrmann CS. Gamma amplitudes are coupled to theta phase in human EEG during visual perception. International Journal of Psychophysiology, 2007, 64(1):24-30. doi: 10.1016/j.ijpsycho.2006.07.005

Duru AD, Eryilmaz H, Emir U, Bayraktaroglu Z, Demiralp T, Ademoglu A. Implementation of low resolution electro-magnetic tomography with FMRI statistical maps on realistic head models. IEEE Conference Proceedings, Engineering in Medicine and Biology Society, 2007, 1:5239-42. doi: 10.1109/IEMBS.2007.4353523

Bayraktaroglu Z, Demiralp T, Lenz D, Junge S, Busch NA, Maess B, Ergen M, Herrmann CS. Interactions of Gamma and Theta Oscillations in the Electroencephalogram (EEG) during Memory Processes. IEEE Conference Proceedings, Signal Processing and Communications Applications, 2006, 1-4.

doi: 10.1109/SIU.2006.1659833

Kirmizi-Alsan E, Bayraktaroglu Z, Gurvit H, Keskin YH, Emre M, Demiralp T. Comparative analysis of event-related potentials during Go/NoGo and CPT: decomposition of electrophysiological markers of response inhibition and sustained attention. Brain Research, 2006, 1104(1):114-28. doi: 10.1016/j.brainres.2006.03.010

Ergenoglu T, Demiralp T, Bayraktaroglu Z, Ergen M, Beydagi H, Uresin Y. Alpha rhythm of the EEG modulates visual detection performance in humans. Cognitive Brain Research, 2004, 20(3):376-83. doi: 10.1016/j.cogbrainres.2004.03.009

Yilmaz G, Midilli K, Turkoglu S, Bayraktaroglu Z, Kuskucu AM, Ozkan E, Atasever L, Calangu S, Altas K. Genetic subtypes of human immunodeficiency virus type 1 (HIV-1) in Istanbul, Turkey. International Journal of Infectious Diseases, 2006, 10(4):286-90. doi: 10.1016/j.ijid.2005.06.011

Scott M Sternson , Deniz Atasoy (11/2014) . Agrp neuron circuits regulate apptite .Neuroendocrinology | doi:10.1159/000369072 

 

Deniz Atasoy,J Nicholas Betley,Wei-Ping Li,Helen H Su,Sinem M Sertel,Louis K Scheffer,Julie H Simpson,Richard D FetterScott M Sternson(11/2014). A genetically specified connectomics approach applied to long-range feeding regulatory circuits. Nature Neuroscience | doi:10.1038/nn.3854

 

Deniz AtasoyJ Nicholas BetleyHelen H SuScott M Sternson (07/2012). Deconstruction of a neural circuit for hunger. Nature |  doi:10.1038/nature11270

Yunlei YangDeniz AtasoyHelen H SuScott M Sternson (09/2011). Hunger states switch a flip-flop memory circuit via a synaptic AMPK-dependent positive feedback loop.Cell doi: 10.1016/j.cell.2011.07.039.

 

Christopher J MagnusPeter H Lee, Deniz Atasoy, Helen H Su,Loren L LoogerScott M Sternson (09/2011). Chemical and genetic engineering of selective ion channel-ligand interactions. Science doi:10.1126/science.1206606

 

Yunlei Yang, Deniz Atasoy, Scott M Sternson (01/2011). Flip-flop memory circuit uses a synaptic AMPK-dependent positive feedback loop and is switched by hunger state.Appetite 

Yexica Aponte, Deniz Atasoy, Scott M Sternson (01/2011). AGRP neurons are sufficient to orchestrate feeding behavior rapidly and without training. Nature Neuroscience | doi:10.1038/nn.2739

 

Hanchuan PengZongcai Ruan, Deniz Atasoy, Scott Sternson (06/2010). Automatic reconstruction of 3D neuron structures using a graph-augmented deformable model. Bioinformatics |  doi: 10.1093/bioinformatics/btq212.

 

Chen Zhang, Deniz Atasoy, Demet AraçXiaofei YangMarc V FucilloAlfred J RobisonJaewon KoAxel T BrungerThomas C Südhof (05/2010). Neurexins physically and functionally interact with GABA(A) receptors. Neuron |  doi: 10.1016/j.neuron.2010.04.008.

 

Deniz Atasoy, Mert ErtuncKrista L MoulderJustin Blackwell,ChiHye ChungJianzhong SuEge T Kavalali (11/2008). Spontaneous and evoked glutamate release activates two populations of NMDA receptors with limited overlap. Journal of Neuroscience |  doi: 10.1523/JNEUROSCI.2432-08.2008

 

Deniz Atasoy, Yexica AponteHelen Hong SuScott M Sternson (08/2008). A FLEX switch targets Channelrhodopsin-2 to multiple cell types for imaging and long-range circuit mapping. Journal of Neuroscience |  doi: 10.1523/JNEUROSCI.1954-08.2008

Alexander A Chubykin, Deniz Atasoy, Mark R EthertonNils Brose,Ege T KavalaliJay R GibsonThomas C Südhof (07/2007). Activity-dependent validation of excitatory versus inhibitory synapses by neuroligin-1 versus neuroligin-2. Neuron | doi:  10.1016/j.neuron.2007.05.029

 

Deniz Atasoy, Susanne SchochAngela HoKrisztina A Nadasy,Xinran LiuWeiqi ZhangKonark MukherjeeElena D Nosyreva,Rafael Fernandez-ChaconMarkus MisslerEge T Kavalali,Thomas C Südhof (03/2007) . Deletion of CASK in mice is lethal and impairs synaptic function. Proceedings of the National Academy of Sciences |  2007 Feb 13;104(7):2525-30

 

Mert ErtuncYildirim SaraChiHye Chung, Deniz Atasoy, Tuhin VirmaniEge T Kavalali (02/2007) . Fast synaptic vesicle reuse slows the rate of synaptic depression in the CA1 region of hippocampus. Journal of Neuroscience |  doi: 10.1523/JNEUROSCI.4051-06.2007

Angela HoWade Morishita, Deniz Atasoy, Xinran LiuKatsuhiko TabuchiRobert E HammerRobert C MalenkaThomas C Südhof (01/2007) . Genetic analysis of Mint/X11 proteins: essential presynaptic functions of a neuronal adaptor protein family. Journal of Neuroscience | Dec 13;26(50):13089-101.

 

Deniz Atasoy, Ege T Kavalali (06/2006) . Presynaptic unsilencing: searching for a mechanism .  Neuron | doi:10.1016/j.neuron.2006.04.01

Tuhin Virmani, Deniz Atasoy, Ege T Kavalali (03/2006) . Synaptic vesicle recycling adapts to chronic changes in activity.  Journal of Neuroscience |  doi: 10.1523/JNEUROSCI.4500-05.2006 

 

Yildirim SaraThomas Biederer, Deniz Atasoy, Alexander ChubykinMarina G MozhayevaThomas C SüdhofEge T Kavalali (02/2005) . Selective capability of SynCAM and neuroligin for functional synapse assembly. Journal of Neuroscience |  doi: 10.1523/JNEUROSCI.3165-04.2005 

 

Sreeganga ChandraFrancesco FornaiHyung-Bae KwonUmar Yazdani, Deniz Atasoy, Xinran LiuRobert E HammerGiuseppe BattagliaDwight C GermanPablo E CastilloThomas C Südhof (11/2004) . Double-knockout mice for alpha- and beta-synucleins: effect on synaptic functions. Proceedings of the National Academy of Sciences | 2004 Oct 12;101(41):14966-71 

 

Thomas BiedererYildirim SaraMarina Mozhayeva, Deniz Atasoy,Xinran LiuEge T KavalaliThomas C Südhof (09/2002) . SynCAM, a synaptic adhesion molecule that drives synapse assembly. Science | doi:10.1126/science.107235

 

 

 

Cagavi E. , Bartulos O., Suh C. Y., Sun B., Yue Z., Jiang Z., Yue L., Qyang Y. “Functional cardiomyocytes derived from Isl1 cardiac progenitors via Bmp4 stimulation” Plos One (2014).

Dunworth W. P., Cardona-Costa J., Cagavi E., Kim J. D., Meadows S., Fisher J. C., Wang Y., Cleaver O., Qyang Y., Ober E. A., and Jin S. W. “Bone Morphogenetic Protein 2 Signaling Negatively Modulates Lymphatic Development in Vertebrate Embryos” Circ Res 114 (1) :56-66 (2014).

Ge X., Ren Y., Bartulos O., Lee M. Y., Yue Z, Kim K. Y., Li W., Amos P. J., Cagavi Bozkulak E., Iyer A., Zheng W., Zhao H., Martin K. A., Kotton D. N., Tellides G., Park I. H., Yue L., Qyang Y. “Modeling Supravalvular Aortic Stenosis Syndrome Using Human Induced Pluripotent Stem Cells” Circulation 126(14):1695-704 (2012).

Alcon A., Cagavi Bozkulak E., Qyang Y. “Regenerating Functional Heart Tissue for Myocardial Repair” Cell Mol Life Sci 69(16):2635-56 (2012).

Amos P. J., Cagavi Bozkulak E., Qyang Y. “Methods of Cell Purification: A Critical Juncture for Laboratory Research and Translational Science” Cells Tissues Organs 195(1-2):26-40 (2012).

Lee M. Y., Cagavi Bozkulak E., Schliffke S., Amos P. J., Ren Y., Ge X., Ehrlich B. E., Qyang Y. “High Density Cultures of Embryoid Bodies Enhanced Cardiac Differentiation of Murine Embryonic Stem Cells” Biochem Biophys Res Commun 416, 51-57 (2011).

Lee M. Y., Sun B., Schliffke S., Yue Z., Ye M., Paavola J, Cagavi Bozkulak E., Amos P.J., Ren Y., Ju R., Jung Y. W., Ge X., Yue L., Ehrlich B. E., Qyang Y. “Derivation of Functional Ventricular Cardiomyocytes Using Endogenous Promoter Sequence from Murine Embryonic Stem Cells” Stem Cell Res 8, 49–57 (2011).

Bozkulak E. C., Weinmaster G. “Selective Use of ADAM10 and ADAM17 in Activation of Notch1 Signaling” Mol Cell Bio 29(21), 5679–5695 (2009).

Rooke N., Vadim M., Cagavi E., Black D. L. “Roles for SR Proteins and hnRNP A1 in the Regulation of c-src Exon N1” Mol Cell Bio 23(6), 1874-1884 (2003).

 

M. Ozansoy, A.N. Başak, “The Central Theme of Parkinson’s Disease: α-Synuclein”, Molecular Neurobiology, 47(2): 460-465, 2013.

G. Cobanoglu, M. Ozansoy, A. N. Başak, “Are Alsin and Spartin Novel Interaction Partners?”, Biochemical and Biophysical Research Communications (BBRC), 427(1): 1-4, 2012.

Enunlu, M. Ozansoy, A. N. Başak, “Alfa-Class Prefoldin Protein UXT is a novel Interacting Partner of Amyotrophic Lateral Sclerosis 2 (Als2) Protein”, Biochemical and Biophysical Research Communications (BBRC), 413(3); pp:471-475, September 30, 2011.

M. Ozansoy, Y. Denizhan, “The Endomembrane System: A Representation of the Extracellular Medium?”, Biosemiotics, Vol. 2, No: 3, pp: 255-267, 2009.

H.A. Hanagasi , P. Serdaroglu , M. Ozansoy , N. Basak , H. Tasli , M. Emre , “Mitochondrial Pathology in Muscle of a Patient with a Novel Parkin Mutation”, International Journal of Neuroscience, Vol. 119, No:10, pp: 1572-1583, 2009.

 

“Induction of Heme Oxygenase I (HMOX1) by HPP-4382: A novel modulator of Bach-1 activity”; Otis Attucks, Kimberly Jasmer, Mark Hannink, Jareer Kassis, Zhenping Zhong, Suparna Gupta, Sam Victory, Mustafa Guzel, Dharma Polisetti, Robert Andrews, Adnan Mjalli, and Matthew Kostura; PLoSOne, 9, 7, (2014), p:1-12, e101044.

 

“Synthesis of Azabridged Bicyclic Ring Systems by Intramolecular Sakurai Reactions”; Mustafa Guzel, Robert Smitherman, and Sezgin Kiren; Tetrahedron Letters, manuscript submitted, 2014.

 

“Substituted Pyran Derivatives Useful as Antitumor Agents”; Mustafa Guzel, Devi Reddy, Rongyuan Xie, Dharma R. Polisetti, Stephen Davis, Soumya Sahoo, Hassan El Abdelloui, and Adnan M. M. Mjalli; High Point Pharmaceuticals Inc., High Point, NC, Patent #US 61/892,053, 2013.

“Substituted Fused Oxazoline Derivatives Useful as Antitumor Agents”; Mustafa Guzel, Devi Reddy, Rongyuan Xie, Dharma R. Polisetti, Soumya Sahoo, Stephen Davis, Mohan Rao, Kalpathy Santhosh, and Adnan M. M. Mjalli; High Point Pharmaceuticals Inc., High Point, NC, Patent #US 61/892,018, 2013.

 

“Characterization and application of molecular binary mixed molecular micelles of sodium10-undecenyl sulfate and sodium N-undecenyl leucinate as pseudostationary phases in micellar electrokinetic chromatography”; Cevdet Akbay, Hamid H. Ahmed, Hakan Arslan, Brittany Graham, and Mustafa Guzel; Talanta, 99, (2012), 441-449.

 

” Study of chemical selectivity of binary mixed micelles of sodium 10-undecenyl sulfate and sodium N-undecenyl leucinate using linear solvation energy reletionships model”; Hamid H. Ahmed, David M. Ahlstrom, Hakan Arslan, Mustafa Guzel, and Cevdet Akbay; Journal of Chromatography A, 1236, (2012), 207-214.

 

“Novel Anticancer agents for hexokinase inhibition-Substituted cyclic-3-indole derivatives”; Mustafa Guzel, Rongyuan Xie, Dharma R. Polisetti, Robert C. Andrews, Adnan M. M. Mjalli, and Stephen Davis; High Point Pharmaceuticals Inc., High Point, NC, Application No: HPP 3018.001 US; patent manuscript submitted, 2013.

 

“Substituted Benzimidazole Derivatives and Methods of Use to Treat Oxidative Stress”; Mustafa Guzel, Sam Victory, Dharma R. Polisetti, Mathew Kostura, Adnan M. M. Mjalli, Otis Attucks, and Jareer Kassis; High Point Pharmaceuticals Inc., High Point, NC, Application No: HPP 3007.000 US; patent manuscript submitted, 2012.

 

“Substituted Pyridine derivatives, Pharmaceutical Compositions, and Methods of Use to Treat Oxidative Stress”; Mustafa Guzel, Sam Victory, Bapu Gaddam, Dharma R. Polisetti, Mathew Kostura and Adnan M. M. Mjalli; High Point Pharmaceuticals Inc., High Point, NC, Patent # WO 2011/022216, (02, 24, 2011).

 

“Oxadiazoanthracene Compounds, for Treatments of Diabetes”; Scott T. Yokum, Mustafa Guzel, Kalpathy C. Santhosh, Dharma R. Polisetti, Daniel P. Christen, Adnan M. Mjalli, and Stephen T. Davis; TransTech Pharma Inc., High Point, NC, , Patent # US 2011/7906507 (03, 15, 2011).

 

“In Silico Ligand-Receptor Docking of Potentially Selective Butyrylcholinesterase Inhibitors Structurally Related to the Marine Natural Product Debromoflustramine B”; Miguel O. Mitchell, Robert W. Figliozzi and Mustafa Guzel;Medicinal Chemistry, Volume 6, Number 3, 2010, Pp. 141-143.

 

“Substituted Pyridine derivatives, Pharmaceutical Compositions, and Methods of Use to Treat Oxidative Stress”; Mustafa Guzel, Sam Victory, Bapu Gaddam, Dharma R. Polisetti, Mathew Kostura and Adnan M. M. Mjalli; High Point Pharmaceuticals Inc., High Point, NC, Patent # US 2010/044508, (05, 08, 2010).

“Mandelic Acid Derivatives and Preparation Thereof”; Mustafa Guzel, Scott T. Yokum, and Dharma R. Polisetti; TransTech Pharma Inc., High Point, NC, Patent # US 2010/0036150, (02,11, 2010).

 

“Oxadiazoanthracene Compounds, Compositions of Oxadiazoanthracene Compounds and Methods of Treatment Using the Same”; Scott T. Yokum, Mustafa Guzel, Kalpathy C. Santhosh, Dharma R. Polisetti, Daniel P. Christen, Adnan M. Mjalli, and Stephen T. Davis; TransTech Pharma Inc., High Point, NC, , Patent # US 2010/0324033 (12, 23, 2010).

 

“Substituted Azoanthracene Derivatives, Pharmaceutical Compositions, and Methods of Use Thereof”; Mustafa Guzel, Scott T. Yokum, Kalpathy C. Santhosh, Dharma R. Polisetti, Chris Behme, Adnan M. Mjalli, and Stephen T. Davis”; TransTech Pharma Inc., High Point, NC, Patent # WO 2010/4824 (07, 10, 2010).

 

“Tricyclic Compounds as Modulators of TNF- Synthesis”; Mustafa Guzel, Mathew Kostura, Adnan M. Mjalli, Bapu Gaddam, and Dharma R. Polisetti; TransTech Pharma Inc., High Point, NC, Patent # US 2010/0190808 (07, 29, 2010).

 

“Oxadiazoanthracene Compounds, for Treatments of Diabetes”; Scott T. Yokum, Mustafa Guzel, Kalpathy C. Santhosh, Dharma R. Polisetti, Daniel P. Christen, Adnan M. Mjalli, and Stephen T. Davis; TransTech Pharma Inc., High Point, NC, , Patent # WO 2009/111700 (11, 09, 2009).

 

“Aryl Carbonyl Derivatives as Therapeutic Agents-Part-II”; Kalpaty C. Santhosh, Mustafa Guzel, Dharma R. Polisetti, Adnan M. Mjalli, and Robert C. Andrews; TransTech Pharma Inc., High Point, NC, Patent # US 2009/7541373 (06, 02, 2009).

 

“Tricyclic Compounds as Modulators of TNF- Synthesis as PDE4 Inhibitors”; Mustafa Guzel, Mathew Kostura, Adnan M. Mjalli, Bapu Gaddam, and Dharma R. Polisetti; TransTech Pharma Inc., High Point, NC, Patent # WO 2009/094528, (07, 30, 2009).

 

Erdem, Sibel S.; Khan, Shazia, Palanasami, Akilan and Hasan, Tayyaba. “Rapid, Low-cost Fluorescent Assay of Beta-Lactamase Derived Antibiotic Resistance and Related Antibiotic Susceptibility, Journal of Biomedical Optics, 2014, 19, 10, 105007.

Avci, Pinar; Erdem, Sibel S.; Hamblin, Michael R. “Photodynamic Therapy: One Step Ahead with Self-Assembled Nanoparticles” Journal of Biomedical Nanotechnology, 2014, 10, 1–16.

Spring, Q. Bryan; Abu-Yousif, O. Adnan.; Palanisami, Akilan.; Zheng, Xiang.; Anbil, Sriram; Sears, R. Bryan; Mensah, B. Lawrence; Goldschmidt, Ruth; Erdem, Sibel S;Oliva, Esther; Hasan, Tayyaba. “Selective treatment and monitoring of disseminated cancer micrometastases in vivo using dual-function activatable immunoconjugates” Proceeding of National Academia of Science U.S.A ., 2014, 11, 10, E933-E942.

Erdem, Sibel S; Fronczek, Frank R.; Watkins, Steven F. “Bis[2,3,4-trimethyl-5-[(3,4,5-trimethyl-2H-pyrrol-2-yl-idene-κ N)meth-yl]-1H-pyrrolato-κ N]copper(II)” Acta Crystallogr. Sect E Struct. Rep. Online. 2012, 68 (11), 1335-1336.

McCarthy, Jason R.; Sazonova, Irina Y.; Erdem, Sibel S.; Hara, Tetsuya.; Thompson, Brian D.; Patel, Purvish.; Botnaru, Ion.; Lin, Charles P.; Reed, Guy L.; Weissleder, Ralph and Jaffer, Farouc A. “Multifunctional Nanoagent for Thrombus-targeted Fibrinolytic Therapy” Nanomedicine , 2012,7, 1017-1028.

Nesterova, Irina V.; Bennett CA.; Erdem, Sibel S.; Hammer, Robert P.; Deininger PL. and Soper, Steven A. “Near-IR single fluorophore quenching system based on phthalocyanine (Pc) aggregation and its application for monitoring inhibitor/activator action on a therapeutic target: L1-EN” Analyst , 2011, 136, 1103-1105.

McCarthy, Jason R.; Bhaumik, Jayeeta; Karver, Mark R.; Erdem, S. Sibel.; Bardon, Kevin.; and Weissleder, Ralph. “Targeted Nanoagents for the Detection of Cancers” Molecular Oncology, 2010, 4, 511-528.

Erdem, Sibel S.; Nesterova, Irina V.; Soper, Steven A. and Hammer, Robert P. “Monoamine Functionalized Phthalocyanines: Microwave-Assisted Solid-Phase Synthesis and Bioconjugation Strategies” The Journal of Organic Chemistry , 2009, 74, 9280-9286.

Nesterova, Irina V.; Erdem, Sibel S.; Pakhomov, Serhii.; Hammer, Robert P. and Soper, Steven A. “Phthalocyanine Dimerization-Based Molecular Beacons Using Near-IR Fluorescence” The Journal of American Chemical Society , 2009, 131, 2432-2433.

Erdem, Sibel S.; Nesterova, Irina V.; Soper, Steven A. and Hammer, Robert P. “Solid- Phase Synthesis of Asymmetrically Substituted “AB3 ” Type Phthalocyanines”, The Journal of Organic Chemistry , 2008, 73, 5003-5007.

 

  • Kerman, BE., Kim HJ., Padmanabhan, K., Mei, A., Georges, S., Joens, MS., Fitzpatrick, JAJ., Japelli, R., Chandross, K., August, P., and Gage, FH. (2015) In vitro myelin formation using embryonic stem cells. Development 142(12):2213-25.

  •  

  • Crotti, A., Benner, C., Kerman, BE., Gosselin, G., Lagier-Tourenne, C., Zuccato, C., Cattaneo, E., Gage, F.H., Cleveland, DW, Glass, CK. (2014) Mutant Huntingtin promotes cell-autonomous microglia activation via myeloid lineage-determining factors PU.1 and C/EBP. Nat Neurosci. 17(4):513-21.

  •  

  • Deshmukh, VA, Tardif, V, Lyssiotis, CA, Green, CC, Kerman, B, Kim, HJ, Padmanabhan, K, Swoboda, JG, Ahmad, I, Kondo, T, Gage, FH, Theofilopoulos, AN, Lawson, BR, Schultz, PG, Lairson, LL. (2013) A regenerative approach to the treatment of multiple sclerosis. Nature. 502(7471):327-32.

 

 

 

Drosophila auditory organ genes and genetic hearing defects. Senthilan PR, Piepenbrock D,
Ovezmyradov G, Nadrowski B, Bechstedt S, Pauls S, Winkler M, Möbius W, Howard J,

 


Göpfert MC. Cell. 2012 Aug 31;150(5):1042-54.
Mining Gene Ontology Data with AGENDA. Ovezmyradov G, Lu Q, Göpfert MC. Bioinform  Biol Insights. 2012;6:63-7.